PROGRAM
Jan 21, 2016 (Thursday)
| 09:00-09:30 | Registration |
| 09:30-10:00 | Tea and coffee served |
| 10:00-10:15 | Welcome address: Frank Eisenhaber, Bioinformatics Institute, A*STAR, Singapore |
| Session 1: Bioinformatics and Biomedical Informatics | |
| 10:15-10:45 | Statistical assessment for untangling higher‐order genotype‐phenotype connections Sese Jun, National Institute of Advanced Industrial Science and Technology, Japan |
| 10:45-11:15 | Computational approaches to identifying regulatory modules in cancer Hyunju Lee, Gwangju Institute of Science and Technology, South Korea |
| 11:15-11:35 | Unraveling the northwestern pakistani genome for clinical and evolutionary inference Muhammad Ilyas, Harvard Medical School, US |
| 11:35-13:00 | Lunch |
| Session 2: Functional and Comparative Genomics | |
| 13:00-13:30 | Translating research to the clinic and beyond Pauline Ng, Genome Institute, A*STAR, Singapore |
| 13:30-13:50 | Coarse‐grained form factors accurately reproduce small angle X‐ray scattering profiles from all‐atom models Dudu Tong, Nanyang Technological University, Singapore |
| 13:50-14:10 | Engineering of core promoter regions enables the construction of constitutive and inducible promoters in Halomonas sp. Tingting Li, Peking University, China |
| 14:10-14:40 | Coffee Break |
| Session 3: Integrative Omics | |
| 14:40-15:10 | Molecular delineation of two major oncogenic pathways governing invasive ductal breast cancer development Vladimir Kuznetsov, Bioinformatics Institute, A*STAR, Singapore |
| 15:10-15:30 | Quantitative model for RNA–DNA interactome prediction Wongsurawat Thidathip, Bioinformatics Institute, A*STAR, Singapore |
| 15:30-15:50 | PIPE: An effective interaction tree kernel approach for extracting protein‐protein interaction passage from biomedical literature Yung‐Chun Chang, Academia Sinica, Taiwan |
| 15:50-16:10 | High‐throughput population genetics analysis of FAT10 oncogene Sim Cheng Teck, Clement, National University of Singapore, Singapore |
| Sponsors’ Talk | |
| 16:10-16:30 | Agilent Technologies |
Jan 22, 2016 (Friday)
| 09:00-09:30 | Registration |
| 09:30-10:15 | Tea and coffee served |
| Session 4: Network and Computational Biology | |
| 10:15-10:45 | A robust and programmable oscillator in synthetic NFκB signaling pathway Ping Wei, Center for Quantitative Biology, Peking University, China |
| 10:45-11:15 | Beyond differential expression ‐ from static network analysis to integrative Chen-Ching Lin, Institute of Biomedical Informatics, National Yang Ming University of Taiwan, Taiwan |
| 11:15-11:35 | Automatic extraction of miRNA‐target interactions from the literature with Principle‐based approach Nai‐Wen Chang, National Taiwan University, Taiwan |
| 11:35-13:00 | Lunch |
| Session 5: Biomolecular Modelling and Design | |
| 13:00-13:30 | Causality and energetics of allosteric communication through the glasses of structure‐based statistical mechanical model Igor Berezovsky, Bioinformatics Institute, A*STAR, Singapore |
| 13:30-14:00 | Metabolite‐centric flux analysis for rational design and engineering of microbes Dong‐Yup Lee, Bioprocessing Technology Institute, A*STAR & National University of Singapore, Singapore |
| 14:00-14:20 | Network‐assisted analysis of virulence and antibiotic‐resistance systems in Pseudomonas aeruginosa Chan Yeong Kim, Yonsei University, Korea |
| 14:20-14:50 | Coffee Break |
| Poster session | |
| 14:50-16:20 | Poster 2 mins’ talk for each poster |
| Lightning Talk | |
| 16:20-16:25 | Metatranscriptomics analysis reveals microbial diversity and functional composition in the wheat rhizosphere Ratna Prabha, ICAR‐National Bureau of Agriculturally Important Microorganisms, INDIA |
| 16:25-16:30 | Improved comprehensive coverage of the plant metabolome Mouli Das, Machine Intelligence Unit, Indian Statistical Institute, INDIA |
| 16:30-16:35 | Recognition of pathway‐related named entities from biomedical literature based on conditional random fields Yu‐Yan Lo, National Central University, Taiwan |
| 16:35-16:40 | Detection of SNPs associated with experimental evolution using parameter estimation of Wright‐Fisher model Yasuhiro Kojima, University of Tokyo, Japan |
| Networking | |
| 16:40-17:10 | “Live” with speakers |
| 17:10-17:25 | Closing remark: Lee Hwee Kuan, Bioinformatics Institute, A*STAR, Singapore |
POSTER
- The poster panel is 2.25 * 1m (Portrait). We recommend a A0 size (1.189 * 0.841m, Portrait).
- Please put up your poster on 21‐Jan, at lunch time (11:35‐13:00) and remove it on 22‐Jan afternoon around 4:20 pm. Any remaining posters will be disposed by the organizers.
- We will provide Velcro Hooks for putting up posters.
| P01 | Gangadhar BHM and Raghvendra Kumar Mishra | Enhanced tolerance of transgenic potato plants over‐expressing non‐specific lipid transfer protein‐1 (StnsLTP1) against multiple abiotic stresses |
| P02 | Xiaomin Ma, Hu Meng and Luhua Lai | Allosteric sites and orthosteric sites are highly correlated in motion |
| P03 | Yuchao Xia, Minghua Deng and Ruibin Xi | SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms |
| P04 | Jinn‐Jy Lin, Feng‐Yu Wang, Tzi‐Yuan Wang and Wen‐Hsiung Li | Characterization of G‐protein coupled receptors in fish genomes through rule‐based approach |
| P05 | Dasom Bae, Ayoung yun, Sangyoung Lee, Heonjong Han and Insuk Lee | Network based identification of key factors in osteogenesis and chondrogenesis |
| P06 | Jun Wang, Hao Li and Minghua Deng | Inferring Gene‐Disease Associations by Integrating eQTL GWAS and Protein‐Protein Interactions |
| P07 | Jianqiang SUN, Rie SHIMIZU ‐INATSUGI, Hugo HoĬuis, Kentaro SHIMIZU, Angela Hay, Kentaro K. SHIMIZU and Jun SESE | Expression analysis of time‐series RNA‐seq data for Cardamine species allotriploid |
| P08 | Smita P. Pilla, Babu R and Ranjit P. Bahadur | Molecular recognition in proteasome assembly |
| P09 | Huipeng Neo, Shanshan Ji, Federico Torta, Anne Bendt, Cynthia Chee, Yee Tang Wang, Amit Singhal, Gennaro De Libero and Markus Wenk | Human Plasma Lipidome Variations in Active Tuberculosis |
| P10 | Heonjong Han, Dasom Bae, Sangyoung Lee, A Young Yun and Insuk Lee | Identification of key factors of osteogenesis using human transcriptional regulatory network |
| P11 | Cheng‐Yu Hou, Wen‐Chi Lee, Hsiao‐Chun Chou and Ho‐Ming Chen | Footprints of ribosomes and exon junction complexes are widespread in RNA degradome |
| P12 | Wan‐Ling Chiu and Yu‐Hsuan Shao | Usage of Wearable Devices for Recording Self‐ Monitoring of Blood Glucose Among Prediabetes Patients |
| P13 | Hiroshi Miyake and Hisanori Kiryu | Probabilistic model to detect consensus subsequence and local structure in RNA set |
| P14 | Yutaro Konta and Hisanori Kiryu | Estimating the process of cancer progression with Wright‐Fisher model |
| P15 | Tomohiro Murase and Masahiro Kasahara | Optimizing the Sequencing Depth for GemCode Plaƞorm |
| P16 | Walt Y.L. Wu, Austin W.T. Chiang, Ting Wang and Ming‐Jing Hwang | A Heterogeneous Biological Data Integrating Approach to Understanding HCV Infection |
| P17 | Chien‐Yun Lee, Ming‐Jie Chang, Wen‐Hao Lin and Hui‐Chih Hung | PAD4 regulates cellular polyamine production through citrullinating the negative regulator antizyme |
| P18 | Yu‐Chieh Liao and Hsin‐Hung Lin | An automated metagenome binning tool |
| P19 | Bo‐Han Hou, Ruei‐Yuan Su, Wen‐Chi Lee, Shu‐I Lin and Ho‐Ming Chen | Genome‐wide identification of graft‐transmissible small RNA using heterografts between Solanaceous species |
| P20 | Ya Fen Liu, Emily Chia‐Yu Su and Hong‐Jie Dai | Mobile Health Applications to Effectively Monitor and Control Type II Diabetes |
| P21 | Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Koji Kadota and Kentaro Shimizu | A refinement method for the binding site prediction using Hidden Markov Random Field |
| P22 | Teppei Nakano, Yoshimi Arima and Hideyuki Saya | Understanding Cell‐Cell Interactions in Heterogeneous Tumors |
| P23 | Di Pan, Shivshankar Umashankar, Amit Rai, Peter Benke, Vinay Kumar Mcs, Vamsidhar Gangu, Megha Rai and Sanjay Swarup | Integrative omics approach to understand resource partitioning strategies in Microcystis aeruginosa, a Bloom‐Forming Cyanobacteria |
| P24 | Kyungsoo Kim and Insuk Lee | Constructing coexpression network using RNAseq data |
| P25 | Satoshi Hiraoka, Asako Machiyama, Minoru Ijichi, Kentaro Inoue, Kenshiro Oshima, Masahira Hattori, Susumu Yoshizawa, Kazuhiro Kogure and Wataru Iwasaki | Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake Tsunami |
| P26 | Koji Ishikawa, Koji Makanae and Hisao Moriya | Perturbed stoichiometry of complex subunits is circumvented by protein‐level dosage compensation |
| P27 | Xiaoran Chai, Shawn Hoon, Mei Hui Liu, E Shyong Tai and Sujoy Ghosh | A systems biology of insulin resistance: transcriptome analysis, alternative splicing detection, coexpression networks and eQTL mapping in fatty acid loaded skeletal muscle cultures from insulin‐sensitive and insulin‐resistant individuals |
| P28 | Yunzhi Wang | Genome‐wide identification of antiviral and proviral host factors in medaka ES cells |
| P29 | Yi‐Yun Cheng, Yun‐Fang Huang, Tsyr‐Yan Dharma Yu and Ping‐Chiang Lyu | Role of Drosophila Memory Related Fatty Acid Binding Protein on Transporting Fatty Acids |
| P30 | Yi‐Shian Peng, Chia‐Wei Tang, Po‐Jen Chang, Hong Chang, Yi‐Yun Peng, Li‐Ching Wu, Shu‐Lin Guo and Hoong ‐Chien Lee | Aging and Alzheimer’s disease connections derived from dysregulation and comorbidity networks suggest new counteractions and treatments |
| P31 | Veerabrahma Pratap Seshachalam and Hui Km | Regulatory networks of hepatocellular carcinoma in TCGA data for the main etiologic factors: hepatitis B virus, hepatitis C virus, alcoholic consumption and non‐alcoholic fatty liver |